Function reference
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demoSample - Sample table of demographic information
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diseaseDxIcdMap - Mapping of diseases and diagnostic ICD codes
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diseaseHpoMap - Mapping of Mendelian diseases and their clinical features
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getDxStatus() - Identify cases and controls for Mendelian diseases
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getGeneticAssociations() - Perform association tests between phenotype risk scores and genotypes
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getPhecodeOccurrences() - Map ICD code occurrences to phecode occurrences
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getResidualScores() - Calculate residual phenotype risk scores
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getScores() - Calculate phenotype risk scores
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getWeights() - Calculate phecode-specific weights for phenotype risk scores
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hpoPhecodeMap - Mapping of HPO terms and phecodes
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icdPhecodeMap - Mapping of ICD codes and phecodes
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icdSample - Sample table of ICD occurrences
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mapDiseaseToPhecode() - Map diseases to phecodes via HPO terms
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preCalcWeights - Pre-calculated weights for calculating phenotype risk scores