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All functions

demoSample
Sample table of demographic information
diseaseDxIcdMap
Mapping of diseases and diagnostic ICD codes
diseaseHpoMap
Mapping of Mendelian diseases and their clinical features
getDxStatus()
Identify cases and controls for Mendelian diseases
getGeneticAssociations()
Perform association tests between phenotype risk scores and genotypes
getPhecodeOccurrences()
Map ICD code occurrences to phecode occurrences
getResidualScores()
Calculate residual phenotype risk scores
getScores()
Calculate phenotype risk scores
getWeights()
Calculate phecode-specific weights for phenotype risk scores
hpoPhecodeMap
Mapping of HPO terms and phecodes
icdPhecodeMap
Mapping of ICD codes and phecodes
icdSample
Sample table of ICD occurrences
mapDiseaseToPhecode()
Map diseases to phecodes via HPO terms
phers()
Perform multiple steps of an analysis using phenotype risk scores
preCalcWeights
Pre-calculated weights for calculating phenotype risk scores